BGGN220 FALL 2007
Graduate Molecular Biology
Dr. Amy Pasquinelli
Mondays and Wednesdays 9:00am-11:50am
2130 Bonner Hall
NOTICE: YOU CAN COME BY JACKIE'S OFFICE
4334 BONNER HALL, SHE HAS ALL YOUR PAPERS AND GRADES
(858) 822-0654
If you have any questions about this website, please contact Jackie Vignes
| DATE | LECTURER & TOPIC | DISCUSSION SECTIONS & QUIZZES |
| MON, 9/24 | AMY PASQUINELLI (9:00-10:50AM) MOLECULAR BIOLOGY OVERVIEW |
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| WED, 9/26 | JIM KADONAGA(9:00-10:20AM) APPROACHES TO SCIENTIFIC INVESTIGATION
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Example Discussion 10:30-11:50AM Bonner 2130-entire class
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| MON, 10/1 | AMY PASQUINELLI (9:00-10:50AM) DNA REPLICATION AND REPAIR 2007 Wyman Ann Rev Gen ds DNA rep.PDF 2004 Hanawalt PNAS rep rev.PDF
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| WED, 10/3 | PETER GEIDUSCHEK(9:30-11:50) PROKARYOTIC GENE ORGANIZATION &RNA POL FUNCTION Review/read the transcription factor and prokaryotic transcription sections in the latest edition of one of the standard textbooks (Alberts et al., Watson et al. or Lodish et al.). |
QUIZ 1 (9:00-9:15AM) |
| MON, 10/8 | JIM KADONAGA (9:00-10:20AM) EUKARYOTIC GENE ORGANIZATION BASAL TRANSCRIPTION BY POL II BGGN220.JK2-2.Trans.PDF-new version |
2006 Zahradka Nature Reassembly.PDF 2006 Zahradka Nature Supp1.PDF
DISCUSSION(10:30-11:50AM) A: Bonner 2140-Peter Geiduschek B: Bonner 3146-Amy Pasquinelli C: Pac Hall 3500-Jim Kadonaga |
| WED, 10/10 | JIM KADONAGA(9:30-11:50AM) CHROMATIN STRUCTURE & ANALYSIS
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QUIZ 2 (9:00-9:15AM) |
| MON, 10/15 | JIM KADONAGA (9:00-10:20AM) CHROMATIN ASSEMBLY & REMODELING |
DISCUSSION(10:30-11:50AM) A: Bonner 2140-Reuben Shaw B: Bonner 3146-Amy Pasquinelli C: Pac Hall 3500-Jim Kadonaga |
| WED, 10/17 | TRACY JOHNSON (9:30-11:50AM) RNA PROCESSING IN THE NUCLEUS |
QUIZ 3 (9:00-9:15AM) |
| MON, 10/22 | TRACY JOHNSON(9:00-10:20AM) RNA PROCESSING IN THE NUCLEUS II NUCLEAR TRANSPORT |
DISCUSSION(10:30-11:50AM) A: Bonner 2140-Amy Pasquinelli B: Bonner 3146-Clodagh O'Shea C: Pac Hall 3500-Tracy Johnson |
| WED, 10/24 | AMY PASQUINELLI (9:30-11:50AM) TRANSLATION 2007 Kozak JCB rev.PDF-added 10/29/07 2007 Scheper NRG translation rev.PDF-added 10/29/07 |
QUIZ 4 (9:00-9:15AM) |
| MON, 10/29 | SIMPSON JOSEPH (9:00-10:50AM) MECHANISMS OF PROTEIN EXPRESSION ramakrishnan2002Cell Review-PDF added 10/29/07
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NO Discussion |
| WED, 10/31 | ALEXANDER HOFFMANN (9:00-11:50AM) Interaction071031.PDF-added 11/6/07 QUANTITATIVE MEASURES AND MEANING FOR PROTEIN-PROTEIN INTERACTIONS |
QUIZ TODAY MAKE-UP 10/24/07 HAPPY HALLOWEEN! |
| MON, 11/5 | RUSSELL DOOLITTLE (9:00-10:20AM) 11_4_07 Doolittle.PDF-added 11/6/07 PROTEIN EVOLUTION |
DISCUSSION(10:30-11:50AM) 2007 Gilbert Science.PDFadded 10/29/07 2007 Gilbert Science Supp.PDFadded 10/29/07 A: Bonner 2140-Russell Doolittle B: Bonner 3146-Amy Pasquinelli C: Pac Hall 3500-Jim Wilhelm |
| WED, 11/7 | AMY PASQUINELLI (9:30-11:50AM) POST-TRANSCRIPTIONAL CONTROL OF mRNA EXPRESSION |
QUIZ 5 (9:00-9:15AM) |
| MON, 11/12 | NO CLASS-VETERAN'S DAY | |
| WED, 11/14 | AMY PASQUINELLI (9:30-11:50AM) 11_14_07 PASQ post txn BGGN220p.PDF--added 11/13/07 2005_Gottesman_TiGs_ncRNAs-PDF-added 11/8/07 2007_Bushati_ARCB_miRNA-PDF-added 11/8/07 SMALL RNA GUIDED GENE REGULATION - miRNAs & RNAi |
QUIZ 6 (9:00-9:15AM) ***EXTRA CREDIT DUE*** |
| MON, 11/19 | BILL MCGINNIS (9:00-10:20AM) MAJOR SIGNAL TRANSDUCTION PATHWAYS McGinnisSignalLec1BGGN220.PDF-added 11/20/07 SigPathwaysReview.PDF-added 11/13/07
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DISCUSSION(10:30-11:50AM) 2007 Kiriakidou Cell Ago2 .PDFadded 10/29/07 2007 Kiriakidou Supp.PDFadded 10/29/07 A: Bonner 2140-Amy Pasquinelli B: Bonner 3146-Bill McGinnis C: Pac Hall 3500-Jeff Long |
| WED, 11/21 | BILL MCGINNIS (9:00-10:20AM) SPECIFIC SIGNALLING PATHWAYS McGinnisSignalLec2_07.PDF-added 11/26/07 PosakonySignalRev.PDF-added 11/20/07
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NO QUIZ-HAPPY THANKSGIVING! |
| MON, 11/26 | GENE YEO (9:00-10:20AM) GENOMICS 11_26_07 Yeo Genomics.PDF-added 11/27/07 2003 Ideker TIGs.PDF-added 11/16/07 2004 Beer Cell.PDF-added 11/16/07 2003 Kellis Nature.PDF-added 11/16/07 2001 Rivas CB.PDF-added 11/16/07 2003 Segal NG.PDF-added 11/16/07 2004 Friedman Science.PDF-added 11/16/07
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DISCUSSION(10:30-11:50AM) KinasesTFpaper2006.PDF-added 11/13/07 KinaseTFsuppl.PDF--added 11/13/07 A: Bonner 2140-Gene Yeo B: Bonner 3146-Bill McGinnis C: Pac Hall 3500-Amy Pasquinelli |
| WED, 11/28 | KEES MURRE (9:30-11:50AM) AGING |
QUIZ 7 (9:00-9:15AM) |
| MON, 12/3 | JEAN WANG (9:00-10:50AM) CANCER 12_3_07 Wang cancer.PDF-added 11/26/07
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No Discussion-work on your final papers! |
| WED, 12/5 | AMY PASQUINELLI(9:00-11:50AM) 2007 Dec 5 Presentations.PDF-added 11/26/07 FUTURE PERSPECTIVES IN MOLECULAR BIOLOGY |
FINAL PAPERS DUE |
If you have any questions about this website, please contact Jackie Vignes