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Sequence Alignments

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Sequence Alignments and Phylogenetic Trees for ten constituents of Conjugational Type IV Macromolecular Transfer Systems of Gram-negative Bacteria (TC# 3.A.7) TypeIVB-02 (Figure S2a) Tree (Figure S2b) TypeIVB-03 (Figure S3a) Tree (Figure S3b) TypeIVB-04 (Figure S4a) Tree (Figure S4b) TypeIVB-05 (Figure S5a) Tree (Figure S5b) TypeIVB-06 (Figure S6a) Tree (Figure S6b) TypeIVB-07 (Figure S7a) Tree (Figure S7b) TypeIVB-08 (Figure S8a) Tree (Figure S8b) TypeIVB-09 (Figure S9a) Tree (Figure S9b) TypeIVB-10 (Figure S10a) Tree (Figure S10b) TypeIVB-11 (Figure S11a) Tree (Figure S11b) Table S4 Sequence Alignment of Disulfide Bond Oxidoreductase Family DsbB DsbD Sequence Alignment of ThrE Family thrE (Full Length) thrE (Repeat Domain) Sequence Alignment of Oxa1 Family Oxa1 (Full Length Sequence) Oxa1 (Conserved Sequence) Sequence Alignment of The Type II (General) Secretory Pathway (IISP) Family Ffh/SRP54 Tree Table SecE/Sec61g Tree Table SecY/Sec61a Tree Table SecG/Sec61b Tree Table FtsY/SRP Receptor a-subunit Tree Table Sequence Alignment of TAT Family TatABE TatC Sequence Alignment of outer membrane proteins FUP (Fimbrial Usher Protein) OMF (Outer Membrane Factor) AT (Auto Transporter) TPS (Two Partner Secretion) Two Families of Prokaryotic Mechanosensitive Channel Proteins (Supplementary Material, Pivetti et al., 2003) Table S1: Proteins of the MscL Family Table S2: Proteins of the MscS Family Figure S4: 16s rRNA Tree of the MscL Family Figure S8: 16s rRNA Tree of the MscL Family Figure S11: Motifs for MscS The Large Conductance Mechano-sensitive Ion Channel (MscL) Family- Multiple Alignment The Samll Conductance Mechano-sensitive Ion Channel (MscS) Family- Multiple Alignment Motifs for MscS General PTS Proteins HPr HPr tree HPr Table Enzymes I HPr Kinases MOP Superfamily MATE family TABLE MVF family TABLE OLF family TABLE PST family TABLE MATE/PST Alignment MVF/PST Alignment OLF/PST Alignment Connexins and Innexins Connexins Human Connexins Innexins Claudins Occludins UT family 10 TMS UT Proteins from Animals 10 TMS UT Proteins from Bacteria 5 TMS UT Proteins 10 TMS UT Proteins