Supplemental Materials for:
Khwaja, M., Ma, Q., Saier, M.H.Jr., 2004., "Topological Analysis of Integral
Membrane Constituents of Prokaryotic ABC Efflux Systems"
Legends for the Supplemenatry Figures (.doc format)
Figure S1 (.aln format) Multiple alignment of recognizable
4 TMS integral membrane protein homologues of the ABC superfamily.
Figure S2 (.aln format) Multiple alignment of recognizable
8 and 10 TMS integral membrane protein homologues of the ABC superfamily.
Figure S3 (.aln format) Multiple alignment of N- and
C-terminal repeat segments of 8 and 10 TMS integral membrane protein homologues of the
ABC superfamily.
Figure S4 (.doc format) Binary alignment of the N- and
C-terminal 4 TMS repeat units of Sav4. The predicted TMSs are shaded and labeled by number.
Figures S5(A)-S7(A) (.doc format) PAUP trees without
bootstrap values for the 4 TMS, 8 and 10 TMS, and the N- and C-terminal halves of
the 8 and 10 TMS integral membrane protein homologues of the ABC superfamily.
Figure S5(B) (.log format) PAUP tree with bootstrap values for
the 4 TMS proteins.
Figure S5(C) (.doc format) Clustal X tree for the 4 TMS proteins.
Figure S6(B) (.log format) PAUP tree with bootstrap values for
the 8 and 10 TMS proteins.
Figure S6(C) (.doc format) Clustal X tree for the 8 and 10 TMS proteins.
Figure S7(B) (.log format) PAUP tree with bootstrap values for the
N- and C-terminal halves of the 8 and 10 TMS proteins.
Figure S7(C) (.doc format) Clustal X tree for the N- and C-terminal
halves of the 8 and 10 TMS proteins.
Tables S1-S4 (.doc format) Analyses of the integral membrane protein
homologues of the ABC superfamily.