P A U P * Version 4.0b10 for Macintosh (PPC/Altivec) Thursday, June 10, 2004 3:24 PM This copy registered to: Abe Chang UC San Diego (serial number = B417367) -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Bootstrap method with fast-heuristic search: Number of bootstrap replicates = 100 Starting seed = 198381765 Optimality criterion = parsimony Character-status summary: Of 567 total characters: All characters are of type 'unord' All characters have equal weight 176 characters are constant 43 variable characters are parsimony-uninformative Number of parsimony-informative characters = 348 Gaps are treated as "missing" Starting tree(s) obtained via stepwise addition with random addition sequence Branch-swapping algorithm: none Branches collapsed (creating polytomies) if maximum branch length is zero Topological constraints not enforced Trees are unrooted 100 bootstrap replicates completed Time used = 8.58 sec Trees for each replicate written to treefile: HprK_paup_consensus.tre Bootstrap 50% majority-rule consensus tree /-------------------------------------------------------------------------------- Mge(1) | +-------------------------------------------------------------------------------- Mpn(2) | | /----------------------------------------------------------------------- Mga(3) | | | | /-------------------------------------------------------------- Mpe(4) | | | | | +-------------------------------------------------------------- Uur(5) | | | | | | /----------------------------------------------------- Mpu(6) | | | | | | | +----------------------------------------------------- FnuN(7) | | | | | | | +----------------------------------------------------- FnuC(8) | | | | | | | | /--------- Tde(9) | | | +--------------------99---------------------+ | | | | \--------- Tpa(10) | | | | | | | +----------------------------------------------------- Lint(11) | | | | | | | +----------------------------------------------------- Gme(12) | | | | | | | | /--------- Bce(13) \--100---+ | | | | | | +--------- Bsu(14) | | +--------------------83---------------------+ | | | +--------- Bha(15) | | | | | | | \--------- Oih1(16) | | | | | +----------------------------------------------------- Lmo(17) | | | | | | /--------- Sau(18) | | | /---74---+ | | | | \--------- Sep(19) | | +---------------100----------------+ | | | \------------------ Sxy(20) | | | | | | /--------- Smu(21) | | | | | | | +--------- Sbo(22) | | | | | | | /---57---+--------- Sag(23) \---69---+ | | | | | | +--------- Spy(24) | | /---75---+ | | | | | \--------- Ssl(25) | | | | | +-----------94------------+ \------------------ Spn(26) | | | | | \--------------------------- Lla(27) | | | | /--------- Lga(28) | +--------------------95---------------------+ | | \--------- Lde(29) | | | | /--------- Lbr(30) | | /---98---+ | | | \--------- Lpl(31) | +----------------58----------------+ | | \------------------ Lca(32) | | | | /--------- Efa(33) | +--------------------100--------------------+ | | \--------- Efam(34) | | | | /--------- Lme(35) | +--------------------99---------------------+ | | \--------- Ooe(36) | | | +----------------------------------------------------- Tte(37) | | | +----------------------------------------------------- Eac(38) | | | +----------------------------------------------------- Cth(39) | | | | /--------- Cac(40) | | /---78---+ | | | \--------- Ctet(41) | +----------------97----------------+ | | \------------------ Cpe1(42) | | \---56---+----------------------------------------------------- Oih2(43) | | /--------- Rso(44) | /--100---+ | | \--------- Rme(45) | /--100---+ | | \------------------ Bfu(46) | /---92---+ | | \--------------------------- Bpe(47) | | | | /--------- Cvi(48) | /--53---+------------99------------+ | | | \--------- Nme(49) | | | | | \------------------------------------ Neu(50) +---67---+ | | /--------- Xca1(51) | | /---94---+ | | | \--------- Xax1(52) | \-----------100-----------+ | \------------------ Xfa(53) | +----------------------------------------------------- Cbu(54) | +----------------------------------------------------- Ctep(55) | +----------------------------------------------------- Mma(56) | +----------------------------------------------------- Rru1(57) | +----------------------------------------------------- Ccr(58) | +----------------------------------------------------- Nar1(59) | +----------------------------------------------------- Bme(60) | +----------------------------------------------------- Mlo1(61) | | /--------- Sme(62) +--------------------87---------------------+ | \--------- Atu(63) | +----------------------------------------------------- Rsp1(64) | +----------------------------------------------------- Bja(65) | | /--------- Mlo2(66) | /---97---+ | | \--------- Rsp2(67) | | | +------------------ Rru3(68) | | | +------------------ Rru4(69) | | +----------------76----------------+------------------ Rru7(70) | | | +------------------ Rru2(71) | | | +------------------ Xax3(72) | | | \------------------ Rru5(76) | | /--------- Xca2(73) +--------------------100--------------------+ | \--------- Xax2(74) | +----------------------------------------------------- Mka(75) | +----------------------------------------------------- Sav(77) | +----------------------------------------------------- Rru6(78) | +----------------------------------------------------- Nar2(79) | \----------------------------------------------------- Cpe2(80) Bipartitions found in one or more trees and frequency of occurrence (bootstrap support values): 1 2 3 4 5 6 7 8 12345678901234567890123456789012345678901234567890123456789012345678901234567890 Freq ------------------------------------------------------------------------------------------ ........................................................................**...... 100 ...........................................**................................... 100 ...........................................***.................................. 100 .................***............................................................ 100 ..................................................***........................... 100 ..****************************************************************************** 100 ................................**.............................................. 100 ........**...................................................................... 99 ...............................................**............................... 99 ..................................**............................................ 99 .............................**................................................. 98 .......................................***...................................... 97 .................................................................**............. 97 ...........................**................................................... 95 ....................*******..................................................... 94 ..................................................**............................ 94 ...........................................****................................. 92 .............................................................**................. 87 ............****................................................................ 83 .......................................**....................................... 78 .................................................................*******...*.... 76 ....................******...................................................... 75 .................**............................................................. 74 ...***************************************************************************** 69 ...........................................**********........................... 67 .............................***................................................ 58 ....................*****....................................................... 57 .....*************************************************************************** 56 ...........................................*******.............................. 53 ....................****************............................................ 48 .......................................................**....................... 47 ........***..................................................................... 47 ...............................................***.............................. 45 ......................................................................**........ 44 ...**........................................................................... 42 ............********............................................................ 40 ............*.*................................................................. 40 ...................................................................**........... 39 .................................................................*******........ 36 .......................................................****..................... 35 .............*.*................................................................ 35 .....................*.*........................................................ 35 ....................................**.......................................... 34 ............***................................................................. 33 ...........................*****................................................ 32 ............*****............................................................... 32 ......************************************************************************** 31 ............**.*................................................................ 30 .........................................................**..................... 30 .................................................................*******...*.*.. 29 ....................*******.....**.............................................. 28 ......**........................................................................ 27 ............****.***............................................................ 26 .......................................................*******************.***** 26 ...........*..........................................*......................... 26 ........................................................................**....*. 25 ...................................................................*****...*.... 25 .......................................................****.*................... 25 ...........................................****...***........................... 23 ............**.................................................................. 22 .......................................................************************* 22 ....................*.*......................................................... 22 .......................................................******................... 21 ............************************............................................ 21 ....................**.*........................................................ 20 ...*.*************************************************************************** 20 .................................................................*********.****. 20 .......................................................**********............... 19 ...........................*******.............................................. 19 ....................................***......................................... 19 .................................................................****.**........ 18 ...........................................****..*.............................. 18 ....................*******.......**............................................ 18 ....................**************.............................................. 18 ......................*.*....................................................... 18 ...................................................................*****........ 18 ................*...****************............................................ 17 .................*.*............................................................ 17 ....................*******.....****............................................ 17 ....................*******..*******............................................ 17 .......................................................*******************.****. 17 ....................................*.*......................................... 17 .............................*****.............................................. 16 .......................................................***...................... 16 .......................................................************************. 16 .................................................................*********.*.... 16 ....................****........................................................ 16 ...................................................................*.*.......... 15 .................................................................**...**........ 15 ...........................................******.***........................... 15 .......................................................**.*..................... 15 .....................****....................................................... 15 ...........................*********............................................ 14 ....................................................................*..*........ 14 ...............................***.............................................. 14 .............................................................***................ 14 ........................................................................**..*... 14 ...........................................***********.......................... 14 ....................****.**..................................................... 14 .........................................................*..*................... 13 ...................................................................***.......... 13 ....................................******...................................... 13 .................................................................*******...*.*.* 13 .................................................................*********.***** 13 ............................................................................*.*. 13 ...................................................................**.**........ 13 ......................**........................................................ 13 ....**.......................................................................... 12 ....**************************************************************************** 12 .................................................................*******...*...* 12 ....................................................................*.**........ 12 .....................................................................*.....*.... 12 ........................................................................**..*.*. 12 .....................*.**....................................................... 12 ...........................................................**................... 12 ...***.......................................................................... 12 ...........................................******............................... 12 ...................................................................**..*........ 11 .................................................................*********.*.*.. 11 ....................................**.***...................................... 11 .................................................................*********.*.**. 11 .............................*******............................................ 11 .......................................*.*...................................... 11 .....*.*........................................................................ 11 ............*****...****************............................................ 11 ........***...........................*......................................... 11 ........................................**...................................... 10 .................................................................**...*......... 10 ....................**.......................................................... 10 .......................................................*********................ 10 ....................*.*.*....................................................... 9 .................................................................*********.**.*. 9 .............................***..**............................................ 9 .....................*...*...................................................... 9 .........................**..................................................... 9 ...........................****................................................. 9 .......................................................********................. 9 ..................**............................................................ 9 .......................................................******..**............... 8 .................................................................****.**...*.... 8 .............................................................................**. 8 ............*.**................................................................ 8 ....................................*..***...................................... 8 ...........................................***********.************************* 8 .................................................................*********.*.*** 8 ....................****.*...................................................... 8 .................................................................**........*.... 8 .....................***........................................................ 8 ...................................................................***.....*.... 8 .......................................................*.*...................... 8 ........................................................*.*..................... 8 ............*..*................................................................ 7 .................................................................*******...*.**. 7 ...............................................................**............... 7 ...........................**..*................................................ 7 .....................................................*.*******************.***** 7 .......................................................***..*................... 7 ....................*..*........................................................ 7 ..........................................*...........*......................... 7 .............***................................................................ 7 ......*.************************************************************************ 7 ....................*.**........................................................ 7 .................................................................***............ 7 ..........................................***********........................... 7 ........................................................***..................... 7 ..***........................................................................... 7 .............................**...**............................................ 7 .......................................***...........*.......................... 7 ............................................................***................. 7 .......************************************************************************* 7 .....................................**......................................... 7 .....*********************************************************************.***** 7 .....**************************************************************************. 6 ........................................................................**..***. 6 .......................................................**********...........*... 6 ..........................................................*.....*............... 6 ............................................................................**.. 6 ...................................................................***.*........ 6 ....................***.*....................................................... 6 .....................................................................***........ 6 .....***........................................................................ 6 ........****..........................................*......................... 6 ...................................................................*.*.....*.... 6 ....................*********...**.............................................. 6 ....................*.***....................................................... 6 .................................................................****........... 6 ...........................................**********..************************. 6 ....................***.**...................................................... 6 ...................................................................***.*...*.... 6 .................................................................*********.*..*. 6 .......................................................*.**..................... 6 .................................................................*********.**... 6 ..................................................*.*........................... 6 ....................................................................*.**...*.... 6 ............***.*............................................................... 6 ...........*........................*........................................... 6 ........................................................**...................... 6 .......................................................**.*.*................... 6 .......................................................**..*.................... 5 ......*************************************************************************. 5 .......................................................******...*............... 5 ....................**.**....................................................... 5 .................................................................*****.......... 5 .......................................................********.*............... 5 ..........................................................*.*................... 5 ....................*****.*..................................................... 5 .......................................................***.**................... 5 .......................................................**********.........*..... 5 ....................*********................................................... 5 ...............................................******........................... 5 .................................................................**.*.**........ 5 ........****.................................................................... 5 .....*.************************************************************************* 5 ...............................................**.***........................... 5 .......................*..*..................................................... 5 ...****************************************************************************. 5 .................................................................******....*.... 5 ...*..************************************************************************** 5 ............**********************.............................................. 5 .................................................................*****.....*.... 5 .......................................................********..*********.***** 5 .......****..................................................................... 5 .....*************************************.************************************* 5 ...........*........................*.*......................................... 5 .....................................................*.************************* 5 ......................................................................*....*.... 5 ........................................................................**...**. 5 .......*..*..................................................................... 5 .................................................................*********.*.*.* 5 ...........................*****..**............................................ 5 ...................................................................**.**...*.... 5 ......********************************************************************.***** 5 ......************************************.************************************* 5 .......................................................*********............*... 5 ......**..*..................................................................... 5 1890 groups at (relative) frequency less than 5% not shown