CLUSTAL X (1.81) multiple sequence alignment


PilV_Xcac       --MRQHGIRR---EAS--GFTLIEVLIAIIVLAFGLLGFALLQTMSVRFVQSANYRTQAT
Orf1_Xfa        MSMKKRSNRRCHWAAPPLGVSLIEVLIALLVLGVGLLAFALLQTMNVRFTKSAQQRTIAS
Orf_Nme         --MKNNDCFR--LKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVS
PilV_Nme        MNMKNNDCFR--LKDSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVS
Orf2_Xfa        MSIASKKAIA--------GISLIEVLISVFILAVGMLGIAAMQVMALRNNDSALQRSHAV
Orf_Vch         --MRNK----------QSGFSLIEVMISFVLIGVGALGLVKLQAYIEQRADYAMHSIEAL
Orf_Asp         --MSKMRAQR--------GVGMVEVLVALLLLAIGVLGFTALQLRAVSASMEASNQVLAL
PilV_Pae        --MLLKSRHR---SLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAA
OutJ_Pch        --MKQPER----------GFTLLEVMLALAIFAALSLAASQVMNGVMRNDEASARKEARL
                  :               *. ::**:::. ::    *.   :          :       

PilV_Xcac       NLAYDLIDQMRS--------NRYQASQYTAASFAAGSVTARGACSRP----TGETVSITQ
Orf1_Xfa        NLAYELLDIMRS--------QRSTLGYYGAITYGSFDGVDGTDCN------YSENATPAA
Orf_Nme         QITQNLMEGMLMNPTIDSDSNKKNYNLYMGNHHALSVVDGDFQVDAI----KTKTQLAEA
PilV_Nme        QITQNLMEGMLMNPTIDSDSNKKNYNLYMGN-HTLSAVDGDFAIDAM----KTKGQLAEA
Orf2_Xfa        IQSYAILEAMRA--------NRSEAIKGSYNTNGMVCTAP------------QANSLVDV
Orf_Vch         NLAEQKLEWFRS---------RGASSANPAIPTAN----------------FATDIVSGN
Orf_Asp         NLARDLTERMRA--------NPQATQCKLYHTEGALAKDTKAYTKAS----NCSGSVSTQ
PilV_Pae        MLGSNLLESMRASP-----KALYDVKDQMATQSDFFKAKGSAFPTAP----SSCTPLPDA
OutJ_Pch        AELQRGFSLMERDFSQIVPRRSQGYELGFYAERYQLSSADWAVSFIRNGWLNPLGIMPRS
                       . :                                                  

PilV_Xcac       HVTRWKCQVAKALGESSSANVVVA------------------------NGQVTVSISWG-
Orf1_Xfa        NMARWRCEVVSALPDGRAQVNLAT------------------------NGEVTVTIRWG-
Orf_Nme         QLKRFSYELKNALPDAAAIHYAVCKDSSGVAPTLSAGSTFSSNCDGSANGDTLIKVLWVN
PilV_Nme        QLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTLS-GNAFSSNCDNKANGDTLIKVLWVN
Orf2_Xfa        DRRDWISNLKAALGDSEHTCGSIS----------------------CDANACTIQVQWDE
Orf_Vch         DVSHPFYTLSWSVPAATLSGALKT---------------------------IHIQASWK-
Orf_Asp         ATAQANSDLLFIYNQANTLGMAVIINTCPNATNAG-----------NNLGRQCVYIAWDK
PilV_Pae        IKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKP-------GDCDGKGSMLEIRLAWRG
OutJ_Pch        ELQRVGYRLRGDTLERLFYDSSEPLSTQEPAVRPVLTG--VTGFVLRFFGKDGWQERWDD
                                                                         *  

PilV_Xcac       DQKWDA--TDPDTSTTFALQTEI-----------------
Orf1_Xfa        DQYWET--DVNKQSTTFNLTSVL-----------------
Orf_Nme         DSAGDS--DIARTNLETNGNNIVYTYQARVGGRE------
PilV_Nme        DSAGDS--DISRTNLEVSGDNIVYTYQARVGGRE------
Orf2_Xfa        TRASDK--RSPAGQLVSSTQTQVFEVRSKL----------
Orf_Vch         DRHGET--QSVELKTMISKYSEFD----------------
Orf_Asp         TAQNFT--NSDTCYKSGGSSYERNTTCLFLEAY-------
PilV_Pae        KQGACV--NAADSSADTSLCYYTLRVEP------------
OutJ_Pch        PANLPQGIAIVVTLRDYGEITRIFLITPRYGAATQRRSER
                                                        
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