CLUSTAL X (1.8) multiple sequence alignment


PilW_Xca        ---------MTARTRAAGLSLIEMMIALVIGLVLLLGVIQVFSASRTAFQLSEGASRAQE
Orf1_Xfa        -----MYSSRLARLRIRGLSLMELLIALLIGSILIVGVIQVFLASWTAYRLSQGIARNQE
Orf1_Nme        MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQ
Orf2_Nme        MRRKMLNVPKGNYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQ
Orf2_Xfa        -----MNHQFALKRFQRGFNLIELMITLLLGLLVVLAAISMFISSRRLYTTTENMSRLQE
ComB_Asp        ----------MKISRHSGFTLVELMVAITLGLLVTAAAIQLYITGITSYNVQKAMSSIQD
PilW_Pae        ------MSMNNRSRRQSGLSMIELLVALAISSFLILGITQIYLDNKRNYLFQQGQAGNQE
                                 *:.::*::::  :. .:  .  . :  .       :     *:

PilW_Xca        NARFALDFLARDIR---MAGHFGCVNDQAHF-VKGQGDPR-------------VNLSTTT
Orf1_Xfa        SGRFALDFLTRDIR---MAGHTGCINDQALLSVDDGGHPNGGNIRSLFLNADDRNTNNVS
Orf1_Nme        DLRNAATLIVRDAR---MAGGFGCFNMSEHP------------------------ATDVI
Orf2_Nme        DLRNAATLIVRDAR---MAGGFGCFNMSEHT------------------------KNDII
Orf2_Xfa        SARVAFELMARDLR---EAGGNACDNTLPVVN-----------------------VLRDS
ComB_Asp        SASFGVNYILDDVRRANLSAPSAYMNDQQPNS----------------------GLILTS
PilW_Pae        NGRFAMMFLDQQLA---KVGFRRRADDPNE-------------------------FAFPA
                .   .   :  :       .     :                                  

PilW_Xca        GSGSPLDFSVSIQGYEATGTSPGAQLRLGGTLSPAAGVPSQIQGLNPAPLP------GSD
Orf1_Xfa        NQPFPLRFDIAIEGFDASGTGRGSLLSLG--AVPVVGSASDWNPVLPAELAALKPIKGSD
Orf1_Nme        PDTT----------------QQNSPFSLK---------RNGIDKLIPIAES-------SN
Orf2_Nme        VDPSKQTQHVPVK--PG-AKQENPLFSLEW--ANTNNTNNNTAKLIPIAES-------TD
Orf2_Xfa        ATEWSRNWSVPLIGFDGGTLTQGVRGTDAIRILSAGTSGGTVKSHDPVNNT---------
ComB_Asp        SNVSELKDNKPLLTLNDAYLTKSAVGDGN---VSQ--KSDQLTIRYQAVEP-------GY
PilW_Pae        QQKT--------------AYCEAFKAG-----------STLVPAVVKAGQS-------GF
                                                                  .         

PilW_Xca        ILVLRFLSPEGVPVTGLVRTGSNSIASFDAGR--LSRLTSGGVGTPTLFGIADCSHADVF
Orf1_Xfa        VLVLRYLSAAENIVTDFNPTSSPTIIYTDESVQGSSKVATGGSG---LYAIADCNGASVF
Orf1_Nme        INYQNFFQVGSALIFQYGIDDVNASTATTVVS-SCAAISKPGKQ---IPTLEDAKKELKI
Orf2_Nme        IKYPGFAQARPALIFQYGIDDLDASAETVVVS-SCSKIAKPGKK---ISTLQEAKSALQI
Orf2_Xfa        --MTLYTQAADLHTNGIMMVCDPQQLSIFQASNVAGTTVSYGNG-----ALNSCTYFGRL
ComB_Asp        DCTGKTLPANTYVVQRYFIGSDKALRCVSDQYQQTGNTITGMDN-KTKTTLDLSGNGQII
PilW_Pae        CYRYQPAPGEAYDCEGNSITTPSDPFATAQAITARVLFVPATAD---VPGSLACSAQTIK
                                                                     .      

PilW_Xca        TGTSAASSVTTSVDLS--------------RYTAQPTGQTMLYRAESLVYYVGTGASGEP
Orf1_Xfa        QASTAPTMTSMNVSAGGLNKTALDFVGYYDRSLSFFPESLALFRAESIAYYIGLNERGIP
Orf1_Nme        PDQDKEQN-----------------------------GNIARQRHVVNAYAVGR-IADEE
Orf2_Nme        TNDDK-QN-----------------------------GNITRQRHVVNAYAVGR-IAGEE
Orf2_Xfa        PSVCNANPP--N---------------------YQHQANSIITELRAVQWYVRTNERGGT
ComB_Asp        IPNVDYMRVQLG------------------------YVKGALNNPTAMSYVSIGDYLDTN
PilW_Pae        EKGQEIVS-------G--------------------------LVDFKLEYGVGPTMAGKR
                                                                 :       .  

PilW_Xca        ALRRARAASD----GTYAQNEELVEGIESLQLLYGLDSTAIISSATPPVGNITSQLTASA
Orf1_Xfa        SLYRARWASAPAAVALVTNVQELVEGVESLQFLYGEDSAVLGKTISS--GYIDHTNPANI
Orf1_Nme        GLFRFQLDDK----GKWGNPQLLVKKVRHMKVRYIYVSGCPEDDDAG------KEETFKY
Orf2_Nme        GLFRFQLDDK----GKWGNPQLLVKKIRHMKVRYIYVSDCPEDDDAG------KEEKFKY
Orf2_Xfa        SLFQEIRGPN----G-VSALGEVAESISAMQITYLLRGATSYVSAAQ-------------
ComB_Asp        KTSAVKKNIN----G---IQQSIKPNINVIQIGLLVQSNETAGNDS--------------
PilW_Pae        EVESFVEQAN-----------IADRPVRALRYSALMASDKNLRQGDS-------------
                                          :  ::      .                      

PilW_Xca        VGASADAAGANQWRRVGAVQVGILARSPNTANAVATANDDPVGVLGVSMQPPSAPDGRYR
Orf1_Xfa        IG---DVDNALRWRRIGTVQIGLLVRGAGQERANSLNPVVNPTVLSVHINPPS--DGQYR
Orf1_Nme        TD---KFDSAQNAVTPAGVEV-LLSSGTDTKIAASSDNHIYAYRIDATIR-----GG---
Orf2_Nme        TG---TFDSSTNAVTPAGVEV-LLSSGTDTKIAASSDNHIYAYRIDATIR-----GG---
Orf2_Xfa        ---------VSEWKNVIAVRVALTIQTTDR---VGVDNNVVSRTLTSVTS----------
ComB_Asp        ---------IVRNRNKQAFDVLGQSVTLNEKNQDTRLRQVVTQTISLRNA---------M
PilW_Pae        ----------------KTLDDWITLYPSSKTSLQGNDKDRLYQIAKGSQT----------
                                  .         .                               

PilW_Xca        ASYELSIALRNRLFGN
Orf1_Xfa        AVYETTVALRNRLYGN
Orf1_Nme        N------VCANRTL--
Orf2_Nme        N------VCANRTL--
Orf2_Xfa        --------LRNRNL--
ComB_Asp        G------WVEEGYVTP
PilW_Pae        --------LRNLVP--
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