CLUSTAL X (1.81) multiple sequence alignment


Orf3_Nme        -----------------MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRVRLSEV
Orf4_Nme        -----------------MKNVQKGFTLLELMIAVAILGILTLITYPSYKTYIRRVRLSEV
PilY2_Xcac      MTTFLQAVRGRVAPVRKSGRAVSGFTLIELMIVVAVIAILSAIAYPSYAEYVRKSRRAQA
Orf_Xfa         --------------------------MIELMVVVAVIAILSSIAYPSYQHYILKSHRDQA
PilE_Xfa        -------MFVNDVTSMIKNKKQNGFTLIEVMIVVVIVAILAAVAMTSYQGSILRTRRSAA
pilE_Lpn        -------MLSHVHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADA
PilE_Pae        -----------------MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEG
ComE_Asp        -----------------MQHHRQGFTLIELMVVVVIIAIFAAIAIPSYQEYIRRSNLAMA
ComF_Asp        ------------------MRVRHGFTLIELMIVVAIIGILAAIAYPSYQNYKIRVNRSDV
Orf1_Nme        ------------------MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINAV
Orf2_Nme        ------------------MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINTV
PilE_Vch        ------MEMIRKIFCKPSVSQQQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQA
                                          ::*::  : ::.::  :. .:*     . .    

Orf3_Nme        KSTLLMNAQTMERYYRQKG------------------------TFATYDKNKLKQNEYFK
Orf4_Nme        RTTLLHNAQTMERYYRQKG------------------------TFKTYDKNKLKQNEYFD
PilY2_Xcac      KADLVEYAQLAVRFYTVRN-----------------TYVNF--SLPTQVSPREEGTAAYR
Orf_Xfa         KADLVEIAQFAERFRTVNN-----------------TYAGFPATNPITQSPRQ-GTASYL
PilE_Xfa        QACLQQQAQFIERYYTTH-------------------MTYLGADQSAPTCDPSANLDNFY
pilE_Lpn        HATLTQDQIILERCYSQN-------------------FSYAAACGALPAFPQTTPNGYYT
PilE_Pae        QALLSDAAARQERYYSQNP-----------------GVGYTKDVAKLGMSSANSPNNLYN
ComE_Asp        QQEMQKLAEQLERYRSRNFSYKGFDATYLYQDKSGQTLAKFDSTKQIVQLPLDTSNTKYT
ComF_Asp        QSELIRVSQQLQSYKMVNHG----------------YANASLAGLGNAASYPVTGTAFYT
Orf1_Nme        RAALLENAHFMEKFYLQNG-----------------RFKQTSTKWPSLPIKEAEGFCIRL
Orf2_Nme        RAALLENAHFMEKFYLQNG-----------------RFKQTSTKWPSLPIKEAEGFCIRL
PilE_Vch        MADMAKIQLYLEEKYQNG-------------------YTATGIVDAQKVCNSFCSVDSDR
                   :                                                        

Orf3_Nme        ITLSE-VSPDHFTLQAVPDPA-------TNEGETCIVTLNDGGTLSAAGNG---------
Orf4_Nme        ITLSE-VSPDHFTLQADPNPT-------TNDGETCVVTLNDGGTIAASGTN---------
PilY2_Xcac      LALQ--TTQSTFSISATAQGN------QVQDK-CGDLGIDQASRKSNSKGT---------
Orf_Xfa         LVFVGDATRTAFTVSAVPQGT------QQNDK-CGTLFINQAGIKTNSQGE---------
PilE_Xfa        RFAVA-AQASTFMLTATPQGA------QAGDR-CGTLTLSNTGERTPR------------
pilE_Lpn        INISN-LTATTYTLTATPVGT------QAKDTECASMSINQANVKTAVDSSAN-------
PilE_Pae        LTIAT-PTSTTYTLTATPINS------QTRDKTCGKLTLNQLGERGAAGKTGNNS-----
ComE_Asp        LAVVDTTTNNPLLTSANAIGQGWAIKAMSADNNNYSLLLTNTGFSCKNKTWANISSSSCG
ComF_Asp        LNLAVDSDNQGYVLTATPISS-------TMQAGNGIICLNQDGQKFWSKAATACS----L
Orf1_Nme        NGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKG-----
Orf2_Nme        NGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKG-----
PilE_Vch        YKIVVETAATSYAITATPQSSKGQNSDQCDGSAYTSLTLNEKGVTSPIG-----------
                               * .                  .   .                   

Orf3_Nme        QSCPDFD--
Orf4_Nme        QSCPGFD--
PilY2_Xcac      -KSDCW---
Orf_Xfa         -LSECW---
PilE_Xfa        -VDGCW---
pilE_Lpn        AQPECWNPG
PilE_Pae        TVNDCWR--
ComE_Asp        TGSESW---
ComF_Asp        SSNSTWDGR
Orf1_Nme        NDKDCKLLK
Orf2_Nme        NDKDCKLLK
PilE_Vch        ----CWK--
                         
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